Publications of Karen Alim

Kriebisch, C. M.E.; Bantysh, O.; Baranda Pellejero, L.; Belluati, A.; Bertosin, E.; Dai, K.; de Roy, M.; Fu, H.; Galvanetto, N.; Gibbs, J. M. et al.; Gomez, S. S.; Granatelli, G.; Griffo, A.; Guix, M.; Gurdap, C. O.; Harth-Kitzerow, J.; Haugerud, I. S.; Häfner, G.; Jaiswal, P.; Javed, S.; Karimi, A.; Kato, S.; Kriebisch, B. A.K.; Laha, S.; Lee, P.-W.; Lipinski, W. P.; Matreux, T.; Michaels, T. C.T.; Poppleton, E.; Ruf, A.; Slootbeek, A. D.; Smokers, I. B.A.; Soria-Carrera, H.; Sorrenti, A.; Stasi, M.; Stevenson, A.; Thatte, A.; Tran, M.; van Haren, M. H.I.; Vuijk, H. D.; Wickham, S. F.J.; Zambrano, P.; Adamala, K. P.; Alim, K.; Andersen, E. S.; Bonfio, C.; Braun, D.; Frey, E.; Gerland, U.; Huck, W. T.S.; Jülicher, F.; Laohakunakorn, N.; Mahadavan, L.; Otto, S.; Saenz, J.; Schwille, P.; Göpfrich, K.; Weber, C. A.; Boekhoven, J.: A roadmap toward the synthesis of life. Chem 11 (3), 102399 (2025)

Kscheschinski, B.; Kramar, M.; Alim, K.: Calcium regulates cortex contraction in Physarum polycephalum. Physical Biology 21, 016001 (2024)

Marbach, S.; Ziethen, N.; Alim, K.: Vascular adaptation model from force balance: Physarum polycephalum as a case study. New Journal of Physics 25 (12), 123052 (2023)

Weingart, M.; Chen, S.; Donat, C.; Helmbrecht, V.; Orsi, W. D.; Braun, D.; Alim, K.: Alkaline vents recreated in two dimensions to study pH gradients, precipitation morphology, and molecule accumulation. Science Advances 9 (39), eadi1884 (2023)

Bhattacharyya, K.; Zwicker, D.; Alim, K.: Memory capacity of adaptive flow networks. Physical Review E 107 (3), 034407 (2023)

Chen, S.; Alim, K.: Network topology enables efficient response to environment in Physarum polycephalum. Physical Biology 20 (4), 046003 (2023)

Misselwitz, A. P.; Lafon, S.; Julien, J.-D.; Alim, K.: Flow-driven control of pulse width in excitable media. Physical Review E 107, 054218 (2023)

Weingart, M.; Chen, S.; Donat, C.; Helmbrecht, V.; Orsi, W.D.; Braun, D.; Alim, K.: Alkaline vents recreated in two dimensions to study pH gradients, precipitation morphology, and molecule accumulation. Science Advances 9 (39), eadi1884 (2023)

Fleig, P.; Kramar, M.; Wilczek, M.; Alim, K.: Emergence of behaviour in a self-organized living matter network. eLife 11, e62863 (2022)

Bhattacharyya, K.; Zwicker, D.; Alim, K.: Memory Formation in Adaptive Networks. Physical Review Letters 129, 028101 (2022)

Codutti, A.; Cremer, J.; Alim, K.: Changing Flows Balance Nutrient Absorption and Bacterial Growth along the Gut. Physical Review Letters 129, 138101 (2022)

Gerber, T.; Loureiro, C.; Schramma, N.; Chen, S.; Jain, A.; Weber, A.; Weigert, A.; Santel, M.; Alim, K.; Treutlein, B. et al.; Camp, J. G.: Spatial transcriptomic and single-nucleus analysis reveals heterogeneity in a gigantic single-celled syncytium. eLife 11, e69745 (2022)

Meigel, F. J.; Darwent, T.; Bastin, L.; Goehring, L.; Alim, K.: Dispersive transport dynamics in porous media emerge from local correlations. Nature Communications 13, 5885 (2022)

Waclawiková, B.; Codutti, A.; Alim, K.; El Aidy, S.: Gut microbiota-motility interregulation: insights from in vivo, ex vivo and in silico studies. Gut Microbes 14 (1), e1997296 (2022)

Kramar, M.; Alim, K.: Encoding memory in tube diameter hierarchy of living flow network. Proceedings of the National Academy of Sciences 118, e2007815118 (2021)

Ramos, J. R. D.; Maizel, A.; Alim, K.: Tissue-wide integration of mechanical cues promotes effective auxin patterning. The European Physical Journal Plus 136, 250 (2021)

Bäuerle, F.; Karpitschka, S. A.; Alim, K.: Living System Adapts Harmonics of Peristaltic Wave for Cost-Efficient Optimization of Pumping Performance. Physical Review Letters 124, 098102 (2020)

Lv, Z.; Rosenbaum, J.; Mohr, S.; Zhang, X.; Kong, D.; Preiß, H.; Kruss, S.; Alim, K.; Aspelmeier, T.; Großhans, J.: The Emergent Yo-yo Movement of Nuclei Driven by Cytoskeletal Remodeling in Pseudo-synchronous Mitotic Cycles. Current Biology 30, pp. 2564 - 2573.e5 (2020)

Kaiser, F.; Alim, K.: Order parameter allows classification of planar graphs based on balanced fixed points in the Kuramoto model. Physical Review E 99, 052308 (2019)

Khadka, J.; Julien, J.-D.; Alim, K.: Feedback from tissue mechanics self-organizes efficient outgrowth of plant organ. Biophysical Journal 117 (10), pp. 1995 - 2004 (2019)