Publications of Armita Nourmohammad
All genres
Journal Article (18)
1.
Journal Article
121 (6), e2300838121 (2024)
Learning the shape of protein microenvironments with a holographic convolutional neural network. Proceedings of the National Academy of Sciences of the United States of America 2.
Journal Article
14 (1), 7137 (2023)
Probabilities of developing HIV-1 bNAb sequence features in uninfected and chronically infected individuals. Nature Communications 3.
Journal Article
105, 055309 (2022)
Mutual information maximization for amortized likelihood inference from sampled trajectories: MINIMALIST. Physical Review E 4.
Journal Article
11, e76004 (2022)
Design of an optimal combination therapy with broadly neutralizing antibodies to suppress HIV-1. eLife 5.
Journal Article
376 (6595), pp. 796 - 797 (2022)
T cell immune responses deciphered. Science 6.
Journal Article
12, 021063 (2022)
Learning and Organization of Memory for Evolving Patterns. Physical Review X 7.
Journal Article
118 (14), e2023141118 (2021)
Deep generative selection models of T and B cell receptor repertoires with soNNia. Proceedings of the National Academy of Sciences 8.
Journal Article
35, 109173 (2021)
Dynamics of B cell repertoires and emergence of cross-reactive responses in patients with different severities of COVID-19. Cell Reports 9.
Journal Article
11, 011044 (2021)
Optimal Evolutionary Control for Artificial Selection on Molecular Phenotypes. Physical Review X 10.
Journal Article
10, e61346 (2021)
Optimal evolutionary decision-making to store immune memory. eLife 11.
Journal Article
10, e72516 (2021)
Antigenic evolution of human influenza H3N2 neuraminidase is constrained by charge balancing. eLife 12.
Journal Article
117 (10), pp. 5144 - 5151 (2020)
The size of the immune repertoire of bacteria. Proceedings of the National Academy of Sciences of the United States of America 13.
Journal Article
36 (16), pp. 4510 - 4512 (2020)
SOS: online probability estimation and generation of T-and B-cell receptors. Bioinformatics 14.
Journal Article
101 (6), 062414 (2020)
Generative models of T-cell receptor sequences. Physical Review E 15.
Journal Article
22, 967 (2020)
Information-Geometric Optimization with Natural Selection. Entropy 16.
Journal Article
11 (1), 1233 (2020)
Major antigenic site B of human influenza H3N2 viruses has an evolving local fitness landscape. Nature Communications 17.
Journal Article
36 (10), pp. 2184 - 2194 (2019)
Fierce selection and interference in B-cell repertoire response to chronic HIV-1. Molecular Biology and Evolution 18.
Journal Article
563 (7730), pp. 197 - 202 (2018)
Gene expression variability across cells and species shapes innate immunity. Nature