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Zeitschriftenartikel (11)

1.
Zeitschriftenartikel
Isacchini, G.; Walczak, A. M.; Mora, T.; Nourmohammad, A.: Deep generative selection models of T and B cell receptor repertoires with soNNia. Proceedings of the National Academy of Sciences 118 (14), e2023141118 (2021)
2.
Zeitschriftenartikel
Montague, Z.; Lv, H.; Otwinowski, J.; DeWitt, W. S.; Isacchini, G.; Yip, G. K.; Ng, W. W.; Tsang, O. T.-Y.; Yuan, M.; Liu, H. et al.; Wilson, I. A.; Peiris, J.S. M.; Wu, N. C.; Nourmohammad, A.; Mok, C. K. P.: Dynamics of B cell repertoires and emergence of cross-reactive responses in patients with different severities of COVID-19. Cell Reports 35, 109173 (2021)
3.
Zeitschriftenartikel
Nourmohammad, A.; Eksin, C.: Optimal Evolutionary Control for Artificial Selection on Molecular Phenotypes. Physical Review X 11, 011044 (2021)
4.
Zeitschriftenartikel
Schnaack, O. H.; Nourmohammad, A.: Optimal evolutionary decision-making to store immune memory. eLife 10, e61346 (2021)
5.
Zeitschriftenartikel
Bradde, S.; Nourmohammad, A.; Goyal, S.; Balasubramanian, V.: The size of the immune repertoire of bacteria. Proceedings of the National Academy of Sciences of the United States of America 117 (10), S. 5144 - 5151 (2020)
6.
Zeitschriftenartikel
Isacchini, G.; Olivares, C.; Nourmohammad, A.; Walczak, A. M.; Mora, T.: SOS: online probability estimation and generation of T-and B-cell receptors. Bioinformatics 36 (16), S. 4510 - 4512 (2020)
7.
Zeitschriftenartikel
Isacchini, G.; Sethna, Z.; Elhanati, Y.; Nourmohammad, A.; Walczak, A. M.; Mora, T.: Generative models of T-cell receptor sequences. Physical Review E 101 (6), 062414 (2020)
8.
Zeitschriftenartikel
Otwinowski, J.; LaMont, C. H.; Nourmohammad, A.: Information-Geometric Optimization with Natural Selection. Entropy 22, 967 (2020)
9.
Zeitschriftenartikel
Wu, N. C.; Otwinowski, J.; Thompson, A. J.; Nycholat, C. M.; Nourmohammad, A.; Wilson, I. A.: Major antigenic site B of human influenza H3N2 viruses has an evolving local fitness landscape. Nature Communications 11 (1), 1233 (2020)
10.
Zeitschriftenartikel
Nourmohammad, A.; Otwinowski, J.; Łuksza, M.; Mora, T.; Walczak, A. M.: Fierce selection and interference in B-cell repertoire response to chronic HIV-1. Molecular Biology and Evolution 36 (10), S. 2184 - 2194 (2019)
11.
Zeitschriftenartikel
Hagai, T.; Chen, X.; Miragaia, R. J.; Rostom, R.; Gomes, T.; Kunowska, N.; Henriksson, J.; Park, J. E.; Proserpio, V.; Donati, G. et al.; Bossini-Castillo, L.; Vieira Braga, F. A.; Naamati, G.; Fletcher, J.; Stephenson, E.; Vegh, P.; Trynka, G.; Kondova, I.; Dennis, M.; Haniffa, M.; Nourmohammad, A.; Lässig, M.; Teichmann, S. A.: Gene expression variability across cells and species shapes innate immunity. Nature 563 (7730), S. 197 - 202 (2018)
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