Publications of Karen Alim

Christine M.E. Kriebisch, Olga Bantysh, Lorena Baranda Pellejero, Andrea Belluati, Eva Bertosin, Kun Dai, Maria de Roy, Hailin Fu, Nicola Galvanetto, Julianne M. Gibbs, Samuel Santhosh Gomez, Gaetano Granatelli, Alessandra Griffo, Maria Guix, Cenk Onur Gurdap, Johannes Harth-Kitzerow, Ivar S. Haugerud, Gregor Häfner, Pranay Jaiswal, Sadaf Javed, Ashkan Karimi, Shuzo Kato, Brigitte A.K. Kriebisch, Sudarshana Laha, Pao-Wan Lee, Wojciech P. Lipinski, Thomas Matreux, Thomas C.T. Michaels, Erik Poppleton, Alexander Ruf, Annemiek D. Slootbeek, Iris B.A. Smokers, Héctor Soria-Carrera, Alessandro Sorrenti, Michele Stasi, Alisdair Stevenson, Advait Thatte, Mai Tran, Merlijn H.I. van Haren, Hidde D. Vuijk, Shelley F.J. Wickham, Pablo Zambrano, Katarzyna P. Adamala, Karen Alim, Ebbe Sloth Andersen, Claudia Bonfio, Dieter Braun, Erwin Frey, Ulrich Gerland, Wilhelm T.S. Huck, Frank Jülicher, Nadanai Laohakunakorn, L. Mahadavan, Sijbren Otto, James Saenz, Petra Schwille, Kerstin Göpfrich, Christoph A. Weber, and Job Boekhoven, "A roadmap toward the synthesis of life," Chem 11 (3), 102399 (2025).

Bjoern Kscheschinski, Mirna Kramar, and Karen Alim, "Calcium regulates cortex contraction in Physarum polycephalum," Physical Biology 21, 016001 (2024).

S. Marbach, Noah Ziethen, and Karen Alim, "Vascular adaptation model from force balance: Physarum polycephalum as a case study," New Journal of Physics 25 (12), 123052 (2023).

Maximilian Weingart, Siyu Chen, Clara Donat, Vanessa Helmbrecht, William D. Orsi, Dieter Braun, and Karen Alim, "Alkaline vents recreated in two dimensions to study pH gradients, precipitation morphology, and molecule accumulation," Science Advances 9 (39), eadi1884 (2023).

Komal Bhattacharyya, David Zwicker, and Karen Alim, "Memory capacity of adaptive flow networks," Physical Review E 107 (3), 034407 (2023).

Siyu Chen and Karen Alim, "Network topology enables efficient response to environment in Physarum polycephalum," Physical Biology 20 (4), 046003 (2023).

Adrian Paul Misselwitz, Suzanne Lafon, Jean-Daniel Julien, and Karen Alim, "Flow-driven control of pulse width in excitable media," Physical Review E 107, 054218 (2023).

M. Weingart, Siyu Chen, C. Donat, V. Helmbrecht, W.D. Orsi, D. Braun, and Karen Alim, "Alkaline vents recreated in two dimensions to study pH gradients, precipitation morphology, and molecule accumulation," Science Advances 9 (39), eadi1884 (2023).

Philipp Fleig, Mirna Kramar, Michael Wilczek, and Karen Alim, "Emergence of behaviour in a self-organized living matter network," eLife 11, e62863 (2022).

Komal Bhattacharyya, David Zwicker, and Karen Alim, "Memory Formation in Adaptive Networks," Physical Review Letters 129, 028101 (2022).

Agnese Codutti, Jonas Cremer, and Karen Alim, "Changing Flows Balance Nutrient Absorption and Bacterial Growth along the Gut," Physical Review Letters 129, 138101 (2022).

Tobias Gerber, Cristina Loureiro, Nico Schramma, Siyu Chen, Akanksha Jain, Anne Weber, Anne Weigert, Malgorzata Santel, Karen Alim, Barbara Treutlein, and J Gray Camp, "Spatial transcriptomic and single-nucleus analysis reveals heterogeneity in a gigantic single-celled syncytium," eLife 11, e69745 (2022).

Felix J. Meigel, Thomas Darwent, Leonie Bastin, Lucas Goehring, and Karen Alim, "Dispersive transport dynamics in porous media emerge from local correlations," Nature Communications 13, 5885 (2022).

Barbora Waclawiková, Agnese Codutti, Karen Alim, and Sahar El Aidy, "Gut microbiota-motility interregulation: insights from in vivo, ex vivo and in silico studies," Gut Microbes 14 (1), e1997296 (2022).

Mirna Kramar and Karen Alim, "Encoding memory in tube diameter hierarchy of living flow network," Proceedings of the National Academy of Sciences 118, e2007815118 (2021).

Joao R. D. Ramos, Alexis Maizel, and Karen Alim, "Tissue-wide integration of mechanical cues promotes effective auxin patterning," The European Physical Journal Plus 136, 250 (2021).

Felix Bäuerle, Stefan A. Karpitschka, and Karen Alim, "Living System Adapts Harmonics of Peristaltic Wave for Cost-Efficient Optimization of Pumping Performance," Physical Review Letters 124, 098102 (2020).

Zhiyi Lv, Jan Rosenbaum, Stephan Mohr, Xiaozhu Zhang, Deqing Kong, Helen Preiß, Sebastian Kruss, Karen Alim, Timo Aspelmeier, and Jörg Großhans, "The Emergent Yo-yo Movement of Nuclei Driven by Cytoskeletal Remodeling in Pseudo-synchronous Mitotic Cycles," Current Biology 30, 2564-2573.e5 (2020).

Franz Kaiser and Karen Alim, "Order parameter allows classification of planar graphs based on balanced fixed points in the Kuramoto model," Physical Review E 99, 052308 (2019).

Jason Khadka, Jean-Daniel Julien, and Karen Alim, "Feedback from tissue mechanics self-organizes efficient outgrowth of plant organ," Biophysical Journal 117 (10), 1995-2004 (2019).